Compare commits
No commits in common. "227b5053b4c35a76d24e8babaf809fcce1d6ee89" and "a95776ac11ebe445eb9bad17e04c2d4f8d91d037" have entirely different histories.
227b5053b4
...
a95776ac11
12 changed files with 81 additions and 712 deletions
1
.gitignore
vendored
1
.gitignore
vendored
|
@ -1,2 +1 @@
|
|||
build
|
||||
.vimspector.json
|
||||
|
|
22
CMakeLists.txt
Normal file
22
CMakeLists.txt
Normal file
|
@ -0,0 +1,22 @@
|
|||
cmake_minimum_required(VERSION 3.14)
|
||||
|
||||
project(
|
||||
ift630_sts3
|
||||
VERSION 0.1.0
|
||||
DESCRIPTION "bs project to learn openMPI / openMP"
|
||||
LANGUAGES C
|
||||
)
|
||||
|
||||
set(src
|
||||
src/main.c
|
||||
)
|
||||
|
||||
set(CMAKE_DEBUG_POSTFIX d)
|
||||
add_executable(ift630_sts3 ${src})
|
||||
|
||||
find_package(MPI) #make it REQUIRED, if you want
|
||||
include_directories(SYSTEM ${MPI_INCLUDE_PATH})
|
||||
target_link_libraries(ift630_sts3 ${MPI_C_LIBRARIES})
|
||||
|
||||
set_target_properties(ift630_sts3 PROPERTIES DEBUG_POSTFIX ${CMAKE_DEBUG_POSTFIX})
|
||||
target_compile_features(ift630_sts3 PRIVATE c_std_99)
|
31
Makefile
31
Makefile
|
@ -1,31 +0,0 @@
|
|||
.PHONY: all omp mpi runmpi runomp
|
||||
|
||||
SRCMPI = src/mpi.c
|
||||
SRCOMP = src/openmp.c
|
||||
OJB = $(SRC:.c=.o)
|
||||
OUT = build
|
||||
|
||||
CC = /usr/bin/gcc
|
||||
MPICC = /usr/bin/mpicc
|
||||
MPIRUN = /usr/bin/mpirun
|
||||
CFLAGS = -ansi -Wall -std=c99 -O3
|
||||
OMP = -fopenmp
|
||||
RM = /bin/rm -fr
|
||||
|
||||
all: mpi openmp
|
||||
cp ./stop_times.txt build
|
||||
|
||||
runmpi: mpi
|
||||
cd build ; $(MPIRUN) -np 8 ./mpi
|
||||
|
||||
runomp: omp
|
||||
cd build ; ./omp
|
||||
|
||||
mpi:
|
||||
$(MPICC) $(SRCMPI) $(CFLAGS) -o $(OUT)/mpi
|
||||
|
||||
omp:
|
||||
$(CC) $(SRCOMP) $(OMP) -o $(OUT)/omp
|
||||
|
||||
clean:
|
||||
$(RM) $(OUT)/*
|
|
@ -1,3 +1,2 @@
|
|||
# ift630_sts3
|
||||
|
||||
[see typst doc](./main.pdf)
|
||||
|
|
BIN
logo.png
BIN
logo.png
Binary file not shown.
Before Width: | Height: | Size: 19 KiB |
BIN
main.pdf
BIN
main.pdf
Binary file not shown.
76
main.typ
76
main.typ
|
@ -1,76 +0,0 @@
|
|||
#set page(
|
||||
numbering: "1 / 1",
|
||||
header: [
|
||||
#set text(8pt)
|
||||
_IFT630 #h(1fr) Violette Paulin_
|
||||
],
|
||||
)
|
||||
|
||||
#let title(content) = {
|
||||
pagebreak(weak:true)
|
||||
set text(size:17pt, weight: "bold")
|
||||
set align(center)
|
||||
v(70pt)
|
||||
[#content]
|
||||
v(50pt)
|
||||
}
|
||||
|
||||
#set par(
|
||||
first-line-indent: 1em,
|
||||
justify: true,
|
||||
)
|
||||
|
||||
#title[
|
||||
IFT630 - Projet #3
|
||||
]
|
||||
|
||||
#show outline.entry.where(
|
||||
level: 1
|
||||
): it => {
|
||||
v(14pt, weak: false)
|
||||
strong(it)
|
||||
}
|
||||
|
||||
|
||||
#v(20pt)
|
||||
|
||||
#image("logo.png")
|
||||
|
||||
#align(center)[
|
||||
#text(size: 15pt)[
|
||||
Violette PAULIN – PAUM1202\
|
||||
_Violette.Paulin\@USherbrooke.ca_\ \
|
||||
]
|
||||
]
|
||||
|
||||
#v(20pt)
|
||||
|
||||
#pagebreak()
|
||||
= Build et test
|
||||
Une fois le dossier `build` créé, on peut build directement en exécutant
|
||||
`make all`. Pour tester MPI, `make runmpi`. Pour tester OpenMP, `make runomp`.
|
||||
Ces commandes créent des fichiers `OutX.txt`. Ceux-ci montrent la clef testée à
|
||||
gauche, et le temps pour la trouver à droite, séparée par un ':'.
|
||||
|
||||
= Performance
|
||||
Je ne comprends pas la question de mesure de performance. Dans mon cas, mesurer
|
||||
les performances revient à mesurer la totalité du temps écoulé, ce qui va
|
||||
comprendre une part non négligeable d'allocation, ainsi que l'overhead des
|
||||
différentes librairies. Alors que si je mesure le temps moyen pour trouver une
|
||||
clef, je mesurerais la même chose dans les deux cas. Il m'est donc impossible de
|
||||
pouvoir tirer une conclusion satisfaisante sur les performances, pour mon
|
||||
implémentation. J'ai quand même fait le choix de mesurer le temps pour trouver
|
||||
une clef, sans prendre en compte l'allocation.
|
||||
|
||||
Cependant, OpenMP peut marcher sur tous les cœurs logiques (thread) de ma
|
||||
machine, alors que MPI ne fonctionne qu'avec les cœurs physiques (il me semble).
|
||||
Ainsi, on gagne théoriquement en temps global avec OpenMP.
|
||||
|
||||
De plus, je n'ai pas utilisé OpenMP de la manière la plus optimale, faute de
|
||||
temps. A la place de diviser sur une boucle, je l'ai divisé comme je l'ai fait
|
||||
pour MPI. Ceci coute plus de temps en allocation, et l'on est contraint à
|
||||
utiliser plusieurs fichiers
|
||||
|
||||
Dans les deux cas, on s'aperçoit que plus une clef est loin, plus elle est difficile à charger.
|
||||
C'est le comportement attendu. De plus, les temps semblent être linéaire, ce
|
||||
qui est encore une fois attendu.
|
BIN
src/ift630_sts3
Executable file
BIN
src/ift630_sts3
Executable file
Binary file not shown.
BIN
src/ift630_sts3d
Executable file
BIN
src/ift630_sts3d
Executable file
Binary file not shown.
59
src/main.c
Normal file
59
src/main.c
Normal file
|
@ -0,0 +1,59 @@
|
|||
/*
|
||||
"Hello World" MPI Test Program
|
||||
*/
|
||||
#include <assert.h>
|
||||
#include <stdio.h>
|
||||
#include <string.h>
|
||||
#include <mpi.h>
|
||||
|
||||
int main(int argc, char** argv) {
|
||||
// Initialize the MPI environment
|
||||
MPI_Init(NULL, NULL);
|
||||
|
||||
int world_size, world_rank;
|
||||
MPI_Comm_size(MPI_COMM_WORLD, &world_size);
|
||||
MPI_Comm_rank(MPI_COMM_WORLD, &world_rank);
|
||||
|
||||
// Get the name of the processor
|
||||
char processor_name[MPI_MAX_PROCESSOR_NAME];
|
||||
int name_len;
|
||||
MPI_Get_processor_name(processor_name, &name_len);
|
||||
|
||||
// Print off a hello world message
|
||||
printf("Hello world from processor %s, rank %d out of %d processors\n",
|
||||
processor_name, world_rank, world_size);
|
||||
|
||||
|
||||
|
||||
// We are assuming at least 2 processes for this task
|
||||
if (world_size < 2) {
|
||||
fprintf(stderr, "World size must be greater than 1 for %s\n", argv[0]);
|
||||
MPI_Abort(MPI_COMM_WORLD, 1);
|
||||
}
|
||||
int number;
|
||||
if (world_rank == 0) {
|
||||
// If we are rank 0, set the number to -1 and send it to process 1
|
||||
number = -1;
|
||||
MPI_Send(
|
||||
/* data = */ &number,
|
||||
/* count = */ 1,
|
||||
/* datatype = */ MPI_INT,
|
||||
/* destination = */ 1,
|
||||
/* tag = */ 0,
|
||||
/* communicator = */ MPI_COMM_WORLD);
|
||||
} else if (world_rank == 1) {
|
||||
MPI_Recv(
|
||||
/* data = */ &number,
|
||||
/* count = */ 1,
|
||||
/* datatype = */ MPI_INT,
|
||||
/* source = */ 0,
|
||||
/* tag = */ 0,
|
||||
/* communicator = */ MPI_COMM_WORLD,
|
||||
/* status = */ MPI_STATUS_IGNORE);
|
||||
printf("Process 1 received number %d from process 0\n", number);
|
||||
}
|
||||
|
||||
// Finalize the MPI environment.
|
||||
MPI_Finalize();
|
||||
}
|
||||
|
340
src/mpi.c
340
src/mpi.c
|
@ -1,340 +0,0 @@
|
|||
#define _XOPEN_SOURCE 700
|
||||
#include <sys/types.h>
|
||||
|
||||
#include <mpi.h>
|
||||
#include <stdio.h>
|
||||
#include <stdlib.h>
|
||||
#include <string.h>
|
||||
#include <time.h>
|
||||
|
||||
enum HEADER {
|
||||
TRIP_ID = 0,
|
||||
ARRIVAL_TIME,
|
||||
DEPARTURE_TIME,
|
||||
STOP_ID,
|
||||
STOP_SEQUENCE,
|
||||
STOP_HEADSIGN,
|
||||
PICKUP_TYPE,
|
||||
DROP_OFF_TYPE,
|
||||
SHAPE_DIST_TRAVELED,
|
||||
TIMEPOINT,
|
||||
END
|
||||
};
|
||||
|
||||
#define DELIM ','
|
||||
#define OVERLAP 100
|
||||
#define STOP_FILE "./stop_times.txt"
|
||||
|
||||
// adding key here!
|
||||
int do_map(char *, size_t, char *, int);
|
||||
void do_reduce(size_t);
|
||||
int parprocess(MPI_File *, const int, const int, char *);
|
||||
|
||||
int
|
||||
main(int argc, char **argv)
|
||||
{
|
||||
// Initialize the MPI environment
|
||||
MPI_Init(NULL, NULL);
|
||||
|
||||
int world_size, world_rank;
|
||||
MPI_Comm_size(MPI_COMM_WORLD, &world_size);
|
||||
MPI_Comm_rank(MPI_COMM_WORLD, &world_rank);
|
||||
|
||||
char *key;
|
||||
if (argc != 2) {
|
||||
if (world_rank == 0)
|
||||
printf("no args ; indexing all\n");
|
||||
key = NULL;
|
||||
}
|
||||
else
|
||||
key = argv[2];
|
||||
|
||||
size_t res = 0;
|
||||
|
||||
int number, size;
|
||||
ssize_t err;
|
||||
MPI_File in;
|
||||
|
||||
if ((err = MPI_File_open(MPI_COMM_WORLD, STOP_FILE, MPI_MODE_RDONLY,
|
||||
MPI_INFO_NULL, &in))) {
|
||||
fprintf(stderr, "%s: Couldn't open file %s\n", argv[0],
|
||||
STOP_FILE);
|
||||
exit(-1);
|
||||
}
|
||||
MPI_Comm_size(MPI_COMM_WORLD, &size);
|
||||
|
||||
res = parprocess(&in, world_rank, world_size, key);
|
||||
|
||||
if (world_rank == 0) {
|
||||
for (char k = 0; k < world_size; k++) {
|
||||
MPI_Recv(&res, 1, MPI_UNSIGNED_LONG, MPI_ANY_SOURCE, 0,
|
||||
MPI_COMM_WORLD, MPI_STATUS_IGNORE);
|
||||
if (res) {
|
||||
//printf("res: found in %lu ns\n", res); break;
|
||||
}
|
||||
else
|
||||
printf("res: not found\n");
|
||||
}
|
||||
}
|
||||
|
||||
MPI_File_close(&in);
|
||||
MPI_Finalize();
|
||||
exit(0);
|
||||
}
|
||||
|
||||
time_t
|
||||
substr_time(struct tm a, struct tm b)
|
||||
{
|
||||
return (a.tm_hour * 3600 + a.tm_min * 60 + a.tm_sec) -
|
||||
(b.tm_hour * 3600 + b.tm_min * 60 + b.tm_sec);
|
||||
}
|
||||
|
||||
char *
|
||||
get_word(char *lines, size_t x, size_t y, size_t num_attr, size_t max_attr)
|
||||
{
|
||||
size_t offset = (x * (num_attr * max_attr) + y * (max_attr));
|
||||
return lines + offset;
|
||||
}
|
||||
|
||||
void
|
||||
fill_lines(char *chunk, size_t num_char, size_t num_lines, size_t num_attr,
|
||||
size_t max_attr, char *lines)
|
||||
{
|
||||
size_t attr_pos = 0, line_pos = 0, word_pos = 0;
|
||||
for (size_t k = 0; k < num_char; ++k) {
|
||||
if (chunk[k] == DELIM) {
|
||||
// go to next attrib
|
||||
char *word = get_word(lines, line_pos, attr_pos,
|
||||
num_attr, max_attr);
|
||||
memcpy(word, chunk + k - word_pos, word_pos);
|
||||
word[word_pos] = '\0';
|
||||
++attr_pos;
|
||||
word_pos = 0;
|
||||
}
|
||||
else if (chunk[k] == '\n') {
|
||||
++line_pos;
|
||||
attr_pos = 0;
|
||||
word_pos = 0;
|
||||
}
|
||||
else if (chunk[k] == '\r') {}
|
||||
else {
|
||||
++word_pos;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void
|
||||
get_lines_info(char *chunk, size_t num_char, size_t *max_attr_size,
|
||||
size_t *num_lines)
|
||||
{
|
||||
// count max line size and number of lines
|
||||
size_t current_attr_size = 0;
|
||||
for (int k = 0; k < num_char; ++k) {
|
||||
// LINE
|
||||
if (chunk[k] == '\n' || chunk[k] == '\r')
|
||||
++(*num_lines);
|
||||
// ATTRIBUTES
|
||||
if (chunk[k] == DELIM) {
|
||||
if (current_attr_size > *max_attr_size)
|
||||
*max_attr_size = current_attr_size;
|
||||
current_attr_size = 0;
|
||||
} else
|
||||
++current_attr_size;
|
||||
}
|
||||
}
|
||||
|
||||
// get num of cols of csv
|
||||
size_t
|
||||
get_num_attr(char *chunk)
|
||||
{
|
||||
size_t num_attr = 0;
|
||||
for (size_t k = 0 ; chunk[k] != '\n' ; ++k)
|
||||
if (chunk[k] == DELIM)
|
||||
++num_attr;
|
||||
return num_attr;
|
||||
}
|
||||
|
||||
int
|
||||
search_key(char *lines, size_t num_lines, size_t num_attr, size_t max_attr,
|
||||
char *key)
|
||||
{
|
||||
for (size_t k = 0; k < num_lines; ++k) {
|
||||
if (!strcmp(get_word(lines, k, TRIP_ID, num_attr, max_attr),
|
||||
key))
|
||||
return 1;
|
||||
}
|
||||
return 0;
|
||||
}
|
||||
|
||||
int
|
||||
get_max_time(char *lines, size_t num_lines, size_t num_attr, size_t max_attr)
|
||||
{
|
||||
struct tm dep_time, arr_time;
|
||||
time_t max_time = 0;
|
||||
for (size_t k = 0; k < num_lines; ++k) {
|
||||
memcpy(&dep_time,
|
||||
get_word(lines, k, DEPARTURE_TIME, num_attr, max_attr),
|
||||
sizeof(struct tm));
|
||||
memcpy(&arr_time,
|
||||
get_word(lines, k, ARRIVAL_TIME, num_attr, max_attr),
|
||||
sizeof(struct tm));
|
||||
|
||||
strptime(get_word(lines, k, DEPARTURE_TIME, num_attr, max_attr),
|
||||
"%H:%M:%S", &dep_time);
|
||||
|
||||
strptime(get_word(lines, k, ARRIVAL_TIME, num_attr, max_attr),
|
||||
"%H:%M:%S", &arr_time);
|
||||
time_t tmp = substr_time(arr_time, dep_time);
|
||||
if (tmp > max_time)
|
||||
max_time = tmp;
|
||||
}
|
||||
return max_time;
|
||||
}
|
||||
|
||||
int
|
||||
do_map(char *chunk, size_t num_char, char *key, int rank)
|
||||
{
|
||||
size_t num_lines = 0, num_attr = 0;
|
||||
size_t max_attr_size = 0;
|
||||
size_t time, res;
|
||||
|
||||
get_lines_info(chunk, num_char, &max_attr_size, &num_lines);
|
||||
num_attr = get_num_attr(chunk);
|
||||
|
||||
// allocate lines (just a big continuous chunk)
|
||||
// is a 2d arr of char*
|
||||
char *lines;
|
||||
lines = calloc(1, num_lines * num_attr * max_attr_size);
|
||||
|
||||
fill_lines(chunk, num_char, num_lines, num_attr, max_attr_size, lines);
|
||||
|
||||
struct timespec start_time, stop_time;
|
||||
|
||||
// test all ; print all
|
||||
if (key == NULL) {
|
||||
char file_name[10];
|
||||
|
||||
sprintf(file_name, "Out%d.txt", rank);
|
||||
FILE *file = fopen(file_name, "w");
|
||||
for (size_t k = 0; k < num_lines; ++k) {
|
||||
char *trip_name = get_word(lines, k, TRIP_ID, num_attr,
|
||||
max_attr_size);
|
||||
clock_gettime(CLOCK_MONOTONIC, &start_time);
|
||||
// int res = get_max_time(lines, num_lines, num_attr,
|
||||
// max_attr_size);
|
||||
size_t res = search_key(lines, num_lines, num_attr,
|
||||
max_attr_size, trip_name);
|
||||
|
||||
clock_gettime(CLOCK_MONOTONIC, &stop_time);
|
||||
|
||||
if (!res)
|
||||
continue; // dont print if err
|
||||
time = (stop_time.tv_sec - start_time.tv_sec) *
|
||||
100000000 +
|
||||
(stop_time.tv_nsec - start_time.tv_nsec);
|
||||
fprintf(file, "%s:%lu\n", trip_name, time);
|
||||
}
|
||||
fclose(file);
|
||||
// just so we dont lock
|
||||
MPI_Send(&time, 1, MPI_UNSIGNED_LONG, 0, 0, MPI_COMM_WORLD);
|
||||
} else { // search for key
|
||||
clock_gettime(CLOCK_MONOTONIC, &start_time);
|
||||
// int res = get_max_time(lines, num_lines, num_attr,
|
||||
// max_attr_size);
|
||||
res = search_key(lines, num_lines, num_attr, max_attr_size,
|
||||
key);
|
||||
|
||||
clock_gettime(CLOCK_MONOTONIC, &stop_time);
|
||||
|
||||
time = (stop_time.tv_sec - start_time.tv_sec) * 100000000 +
|
||||
(stop_time.tv_nsec - start_time.tv_nsec);
|
||||
if (res)
|
||||
MPI_Send(&time, 1, MPI_UNSIGNED_LONG, 0, 0,
|
||||
MPI_COMM_WORLD);
|
||||
else
|
||||
MPI_Send(&res, 1, MPI_UNSIGNED_LONG, 0, 0,
|
||||
MPI_COMM_WORLD);
|
||||
}
|
||||
free(lines);
|
||||
free(chunk);
|
||||
return res;
|
||||
}
|
||||
|
||||
// help from https://stackoverflow.com/questions/12939279/mpi-reading-from-a-text-file
|
||||
// is hosted under a permissive licence, ty Jonathan Dursi :)
|
||||
int
|
||||
parprocess(MPI_File *in, const int rank, const int size, char *key)
|
||||
{
|
||||
// reads revelant lines from file to chunk.
|
||||
// IN OUR CASE we will use overlap to reach EOF of this line.
|
||||
// Duplicates dont matter in our case ; res will be the same either way.
|
||||
size_t proc_size, total_size, total_size_overlap;
|
||||
char *chunk;
|
||||
MPI_Offset globalstart;
|
||||
MPI_Offset globalend;
|
||||
MPI_Offset filesize;
|
||||
|
||||
MPI_File_get_size(*in, &filesize);
|
||||
filesize--; /* get rid of text file eof */
|
||||
proc_size = filesize / size;
|
||||
globalstart = rank * proc_size;
|
||||
globalend = globalstart + proc_size - 1;
|
||||
if (rank == size - 1)
|
||||
globalend = filesize - 1;
|
||||
|
||||
/* add overlap to the end of everyone's chunk except last
|
||||
* proc... */
|
||||
size_t globalend_overlap = globalend;
|
||||
if (rank != size - 1)
|
||||
globalend_overlap += OVERLAP;
|
||||
|
||||
total_size_overlap = globalend_overlap - globalstart + 1;
|
||||
total_size = globalend - globalstart + 1;
|
||||
|
||||
/* allocate memory, filled with 0 */
|
||||
chunk = calloc(1, total_size);
|
||||
|
||||
ssize_t err;
|
||||
{
|
||||
err = MPI_File_read_at_all_begin(*in, globalstart, chunk,
|
||||
total_size, MPI_CHAR);
|
||||
if (err) {
|
||||
printf("error %lu\n", err);
|
||||
MPI_Finalize();
|
||||
}
|
||||
err = MPI_File_read_at_all_end(*in, chunk, MPI_STATUS_IGNORE);
|
||||
if (err) {
|
||||
printf("error %lu\n", err);
|
||||
MPI_Finalize();
|
||||
}
|
||||
}
|
||||
|
||||
// eh commenting this out, at worst we'll have one unusable line, but this
|
||||
// still works w/ padding
|
||||
// fills the first incoherent bytes with \0
|
||||
//size_t k = 0;
|
||||
//if (rank != 0) { // first has no incoherece at begining
|
||||
// for (; chunk[k] != '\r' && chunk[k] != '\n';
|
||||
// ++k) // get number of incoherent bytes :)
|
||||
// ;
|
||||
// // reset
|
||||
|
||||
// memmove(chunk, chunk + k, total_size); // - 2: dont count \n\r
|
||||
//}
|
||||
|
||||
// fill char after next EOL wiht \0 ; starting from proc_size to end of
|
||||
// overlap
|
||||
//if (rank != size) { // last doesnt have padding, dont check it
|
||||
// for (; (chunk[globalend] != '\n' && chunk[globalend] != '\r') &&
|
||||
// globalend < globalend_overlap;
|
||||
// ++globalend)
|
||||
// ;
|
||||
// memset(chunk + globalend, '\0', OVERLAP);
|
||||
// //
|
||||
//}
|
||||
//chunk[total_size_overlap] = '\0'; // just to be sure!
|
||||
|
||||
int max = do_map(chunk, total_size, key, rank);
|
||||
|
||||
return max;
|
||||
}
|
263
src/openmp.c
263
src/openmp.c
|
@ -1,263 +0,0 @@
|
|||
#define _XOPEN_SOURCE 700
|
||||
#include <sys/types.h>
|
||||
|
||||
#include <omp.h>
|
||||
#include <stdio.h>
|
||||
#include <stdlib.h>
|
||||
#include <string.h>
|
||||
#include <time.h>
|
||||
|
||||
enum HEADER {
|
||||
TRIP_ID = 0,
|
||||
ARRIVAL_TIME,
|
||||
DEPARTURE_TIME,
|
||||
STOP_ID,
|
||||
STOP_SEQUENCE,
|
||||
STOP_HEADSIGN,
|
||||
PICKUP_TYPE,
|
||||
DROP_OFF_TYPE,
|
||||
SHAPE_DIST_TRAVELED,
|
||||
TIMEPOINT,
|
||||
END
|
||||
};
|
||||
|
||||
#define DELIM ','
|
||||
#define OVERLAP 100
|
||||
#define STOP_FILE "./stop_times.txt"
|
||||
|
||||
// adding key here!
|
||||
int do_map(char *, size_t, int);
|
||||
void do_reduce(size_t);
|
||||
int parprocess(char *, size_t);
|
||||
|
||||
int
|
||||
main(int argc, char **argv)
|
||||
{
|
||||
size_t res = 0;
|
||||
|
||||
ssize_t err;
|
||||
FILE *in = fopen("./stop_times.txt", "rb");
|
||||
|
||||
if (!in) {
|
||||
fputs("File error", stderr);
|
||||
exit(1);
|
||||
}
|
||||
|
||||
fseek(in, 0, SEEK_END);
|
||||
int file_size = ftell(in);
|
||||
rewind(in);
|
||||
|
||||
char *buffer = (char *)malloc(sizeof(char) * file_size);
|
||||
// copy the file into the buffer:
|
||||
fread(buffer, 1, file_size, in);
|
||||
|
||||
omp_set_num_threads(16);
|
||||
//do_map(buffer, file_size);
|
||||
parprocess(buffer, file_size);
|
||||
|
||||
fclose(in);
|
||||
exit(0);
|
||||
}
|
||||
|
||||
time_t
|
||||
substr_time(struct tm a, struct tm b)
|
||||
{
|
||||
return (a.tm_hour * 3600 + a.tm_min * 60 + a.tm_sec) -
|
||||
(b.tm_hour * 3600 + b.tm_min * 60 + b.tm_sec);
|
||||
}
|
||||
|
||||
char *
|
||||
get_word(char *lines, size_t x, size_t y, size_t num_attr, size_t max_attr)
|
||||
{
|
||||
size_t offset = (x * (num_attr * max_attr) + y * (max_attr));
|
||||
return lines + offset;
|
||||
}
|
||||
|
||||
void
|
||||
fill_lines(char *chunk, size_t num_char, size_t num_lines, size_t num_attr,
|
||||
size_t max_attr, char *lines)
|
||||
{
|
||||
size_t attr_pos = 0, line_pos = 0, word_pos = 0;
|
||||
for (size_t k = 0; k < num_char; ++k) {
|
||||
if (chunk[k] == DELIM) {
|
||||
// go to next attrib
|
||||
char *word = get_word(lines, line_pos, attr_pos,
|
||||
num_attr, max_attr);
|
||||
memcpy(word, chunk + k - word_pos, word_pos);
|
||||
word[word_pos] = '\0';
|
||||
++attr_pos;
|
||||
word_pos = 0;
|
||||
}
|
||||
else if (chunk[k] == '\n') {
|
||||
++line_pos;
|
||||
attr_pos = 0;
|
||||
word_pos = 0;
|
||||
}
|
||||
else if (chunk[k] == '\r') {}
|
||||
else {
|
||||
++word_pos;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void
|
||||
get_lines_info(char *chunk, size_t num_char, size_t *max_attr_size,
|
||||
size_t *num_lines)
|
||||
{
|
||||
// count max line size and number of lines
|
||||
size_t current_attr_size = 0;
|
||||
for (int k = 0; k < num_char; ++k) {
|
||||
// LINE
|
||||
if (chunk[k] == '\n' || chunk[k] == '\r')
|
||||
++(*num_lines);
|
||||
// ATTRIBUTES
|
||||
if (chunk[k] == DELIM) {
|
||||
if (current_attr_size > *max_attr_size)
|
||||
*max_attr_size = current_attr_size;
|
||||
current_attr_size = 0;
|
||||
} else
|
||||
++current_attr_size;
|
||||
}
|
||||
}
|
||||
|
||||
// get num of cols of csv
|
||||
size_t
|
||||
get_num_attr(char *chunk)
|
||||
{
|
||||
size_t num_attr = 0;
|
||||
for (size_t k = 0 ; chunk[k] != '\n' ; ++k)
|
||||
if (chunk[k] == DELIM)
|
||||
++num_attr;
|
||||
return num_attr;
|
||||
}
|
||||
|
||||
int
|
||||
search_key(char *lines, size_t num_lines, size_t num_attr, size_t max_attr,
|
||||
char *key)
|
||||
{
|
||||
for (size_t k = 0; k < num_lines; ++k) {
|
||||
if (!strcmp(get_word(lines, k, TRIP_ID, num_attr, max_attr),
|
||||
key))
|
||||
return 1;
|
||||
}
|
||||
return 0;
|
||||
}
|
||||
|
||||
int
|
||||
get_max_time(char *lines, size_t num_lines, size_t num_attr, size_t max_attr)
|
||||
{
|
||||
struct tm dep_time, arr_time;
|
||||
time_t max_time = 0;
|
||||
for (size_t k = 0; k < num_lines; ++k) {
|
||||
memcpy(&dep_time,
|
||||
get_word(lines, k, DEPARTURE_TIME, num_attr, max_attr),
|
||||
sizeof(struct tm));
|
||||
memcpy(&arr_time,
|
||||
get_word(lines, k, ARRIVAL_TIME, num_attr, max_attr),
|
||||
sizeof(struct tm));
|
||||
|
||||
strptime(get_word(lines, k, DEPARTURE_TIME, num_attr, max_attr),
|
||||
"%H:%M:%S", &dep_time);
|
||||
|
||||
strptime(get_word(lines, k, ARRIVAL_TIME, num_attr, max_attr),
|
||||
"%H:%M:%S", &arr_time);
|
||||
time_t tmp = substr_time(arr_time, dep_time);
|
||||
if (tmp > max_time)
|
||||
max_time = tmp;
|
||||
}
|
||||
return max_time;
|
||||
}
|
||||
|
||||
int
|
||||
do_map(char *chunk, size_t num_char, int rank)
|
||||
{
|
||||
size_t num_lines = 0, num_attr = 0;
|
||||
size_t max_attr_size = 0;
|
||||
size_t time, res;
|
||||
|
||||
get_lines_info(chunk, num_char, &max_attr_size, &num_lines);
|
||||
num_attr = get_num_attr(chunk);
|
||||
|
||||
// allocate lines (just a big continuous chunk)
|
||||
// is a 2d arr of char*
|
||||
char *lines;
|
||||
lines = calloc(1, num_lines * num_attr * max_attr_size);
|
||||
|
||||
fill_lines(chunk, num_char, num_lines, num_attr, max_attr_size, lines);
|
||||
|
||||
struct timespec start_time, stop_time;
|
||||
|
||||
// test all ; print all
|
||||
char file_name[] = "OutXX.txt";
|
||||
sprintf(file_name, "Out%d.txt", rank);
|
||||
|
||||
|
||||
FILE *file = fopen(file_name, "w");
|
||||
for (size_t k = 0; k < num_lines; ++k) {
|
||||
char *trip_name = get_word(lines, k, TRIP_ID, num_attr,
|
||||
max_attr_size);
|
||||
clock_gettime(CLOCK_MONOTONIC, &start_time);
|
||||
// int res = get_max_time(lines, num_lines, num_attr,
|
||||
// max_attr_size);
|
||||
size_t res = search_key(lines, num_lines, num_attr,
|
||||
max_attr_size, trip_name);
|
||||
|
||||
clock_gettime(CLOCK_MONOTONIC, &stop_time);
|
||||
|
||||
if (!res)
|
||||
continue; // dont print if err
|
||||
time = (stop_time.tv_sec - start_time.tv_sec) *
|
||||
100000000 +
|
||||
(stop_time.tv_nsec - start_time.tv_nsec);
|
||||
fprintf(file, "%s:%lu\n", trip_name, time);
|
||||
}
|
||||
fclose(file);
|
||||
// just so we dont lock
|
||||
|
||||
free(lines);
|
||||
free(chunk);
|
||||
return res;
|
||||
}
|
||||
|
||||
// help from https://stackoverflow.com/questions/12939279/mpi-reading-from-a-text-file
|
||||
// is hosted under a permissive licence, ty Jonathan Dursi :)
|
||||
int
|
||||
parprocess(char *buff, size_t file_size)
|
||||
{
|
||||
// reads revelant lines from file to chunk.
|
||||
// IN OUR CASE we will use overlap to reach EOF of this line.
|
||||
// Duplicates dont matter in our case ; res will be the same either way.
|
||||
size_t proc_size, total_size, total_size_overlap;
|
||||
size_t start;
|
||||
size_t end;
|
||||
|
||||
#pragma omp parallel
|
||||
{
|
||||
size_t size = omp_get_num_threads();
|
||||
size_t rank = omp_get_thread_num();
|
||||
|
||||
printf("%lu / %lu\n", rank, size);
|
||||
proc_size = file_size / size;
|
||||
start = rank * proc_size;
|
||||
end = start + proc_size - 1;
|
||||
if (rank == size - 1)
|
||||
end = file_size - 1;
|
||||
|
||||
/* add overlap to the end of everyone's chunk except last
|
||||
* proc... */
|
||||
size_t end_overlap = end;
|
||||
if (rank != size - 1)
|
||||
end_overlap += OVERLAP;
|
||||
|
||||
total_size_overlap = end_overlap - start + 1;
|
||||
total_size = end - start + 1;
|
||||
|
||||
/* allocate memory, filled with 0 */
|
||||
char *chunk = calloc(1, total_size);
|
||||
memcpy(chunk, buff + start, proc_size);
|
||||
|
||||
ssize_t err;
|
||||
int max = do_map(chunk, total_size, rank);
|
||||
}
|
||||
return 0;
|
||||
}
|
Loading…
Reference in a new issue